cytopy.data.mapping¶
Each staining panel will have a combination of detection channel and the marker associated with that channel. This module houses ChannelMap, a simple class that keeps track of these mappings.
Copyright 2020 Ross Burton
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Classes:
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Defines channel/marker mapping. |
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class
cytopy.data.mapping.
ChannelMap
(*args, **kwargs)¶ Defines channel/marker mapping. Each document will contain a single value for channel and a single value for marker, these two values are treated as a pair within the panel.
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channel
¶ name of channel (e.g. fluorochrome)
- Type
str
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marker
¶ name of marker (e.g. protein)
- Type
str
Methods:
check_matched_pair
(channel, marker)Check a channel/marker pair for resemblance
to_dict
()Convert object to python dictionary
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check_matched_pair
(channel: str, marker: str) → bool¶ Check a channel/marker pair for resemblance
- Parameters
channel (str) – channel to check
marker (str) – marker to check
- Returns
True if equal, else False
- Return type
bool
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to_dict
() → dict¶ Convert object to python dictionary
- Returns
- Return type
dict
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