cytopy
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Table of Contents
Installation
Docker
Installing MongoDB
Installing CytoPy
Introduction to the framework and managing data
Connecting to the database
Setting up a Project
Adding Subjects and meta data
Adding an Experiment
Adding cytometry data
Accessing data
Deleting data
Examples
Tutorials
General note on utilities
API Reference
cytopy.data.errors
cytopy.data.experiment
cytopy.data.fcs
cytopy.data.gate
cytopy.data.gating_strategy
cytopy.data.geometry
cytopy.data.mapping
cytopy.data.population
cytopy.data.project
cytopy.data.read_write
cytopy.data.setup
cytopy.data.subject
cytopy.flow.cell_classifier.cell_classifier
cytopy.flow.cell_classifier.keras_classifier
cytopy.flow.cell_classifier.sklearn_classifier
cytopy.flow.cell_classifier.utils
cytopy.flow.clustering.consensus
cytopy.flow.clustering.flowsom
cytopy.flow.clustering.main
cytopy.flow.plotting.asinh_transform
cytopy.flow.plotting.embeddings_graphs
cytopy.flow.plotting.flow_plot
cytopy.flow.plotting.hlog_transform
cytopy.flow.plotting.logicle_transform
cytopy.flow.build_models
cytopy.flow.dim_reduction
cytopy.flow.fda_norm
cytopy.flow.feature_selection
cytopy.flow.gate_search
cytopy.flow.neighbours
cytopy.flow.ref
cytopy.flow.sampling
cytopy.flow.transform
cytopy.flow.tree
cytopy.flow.variance
License
cytopy
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API Reference
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cytopy.data.gate
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